The reason I had to clearance the sides was because there was no end-play shim on the flywheel end, so the crank would slide around a bit. Since I didnt know exactly where it would sit when shimmed and torqued, I decided to shave the case a bit to make sure that it wasn't an issue. Even when I had the crank pushed all the way backwards, it was verrrry close to the sides of the middle journal.
I have the correct bearings which are std inner diameter. I went to another machinst last night with my brother and they both measured everything and said it looked good in theory and after fitting the rear main bearing into all of the journals they said that it felt as snug as it should be. The only thing they couldnt check was if the crank was bent.
I know the half bearings are not perfectly round, and that this might cause a bit of resistance. The guys mentioned that I should probably clean the case better since there was oil in behind the bearings and that is preventing the surfaces from mating properly. Also, they suggested using engine pre-lube instead of just motor oil because its thinner and more slippery than motor oil, which could be causing some of my issues. Additionally, they said I should chamfer the tops of the journals slightly for the halve bearings because the material is mushrooming out when the case is tightened and has nowhere to go.
They also showed me what I can try to seat everything better, so I'm going to try all this stuff tonight and see what I can do. Since two reputable machinists have said that the OD on the bearings measures correctly and that the journals also measure correctly when the case is tight, I'm not going to take the bearing off the crank just to check it.
... they also were of the opinion that I could probably build it, torque everything together, and then as long as I could rotate it with a small amount of leverage (ie: ratchet on a gland nut, NOT fingers), then it was probably fine and that things would seat themselves properly once I started the engine. I'm pretty hesitant to take that advice.
All this leads me to believe that I have a slightly bent crank, which is a shame, but considering that I had let it sit on a table for a few days with the timing pulley still on it, I guess I shouldnt be surprised. I had NO idea that a crank was that sensitive.
-biggie